Full list of Publications
- Mondal, S., & Cui, Q. Sequence Sensitivity in Membrane Remodeling by Polyampholyte Coacervates. J. Phys. Chem. B 128 (9), 2087–2099, (2024).
- Mondal, S.‡; Mukherjee, S.‡; Bagchi, B. Melting and Bubble Formation in a Double-Stranded DNA: Microscopic Aspects of Early Base-Pair Opening Events and the Role of Water. J. Phys. Chem. B 128 (9), 2076–2086, (2024) [‡equal contribution]
- Mehta, N., Mondal, S., Watson, E. T., Cui. Q., & Chapman, E. R. The juxtamembrane linker of synaptotagmin 1 regulates Ca2+ binding via liquid-liquid phase separation. Nat. Comm. 15, 262 (2024).
- Mondal, S., & Cui, Q. Coacervation Induced Remodeling of Nanovesicles. J. Phys. Chem. Lett. 14, 4532-4540 (2023).
- Mondal, S., & Cui, Q. Membrane remodeling and vesicle formation by biomolecular condensates: A coarse-grained simulation study. Biophys. J. 122 (3), 65a-66a, (2023).
- Chen, S-J; Hassan, M; Jernigan, R-L.; Jia, K; Kihara, D; Kloczkowski, A; Kotelnikov, S; Kozakov, D; Liang, J; Liwo, A; Matysiak, S; Meller, J; Micheletti, C; Mitchell, J-C.; Mondal, S; Nussinov, R; Okazaki, K; Padhorny, D; Skolnick, J; Sosnick, T-S.; Stan, G; Vakser, I; Zou, X; & Rose, G-D. "Opinion: Protein folds vs. protein folding: Differing questions, different challenges". Proc. Natl. Acad. Sci. U.S.A. 120 (1), e2214423119 (2023).
- Mondal, S.‡; Mukherjee, S.‡; Bagchi, B. Bimodal 1/f Noise and Anticorrelation between DNA-Water and DNA-Ion Energy Fluctuations. J. Phys. Chem. B. 127 (9), 1965–1975, (2023) [‡equal contribution]
- Mondal, S., & Bagchi, B. Research and Education under Pandemic Period: Psychological Impact on Students in India. Chemical Education Research during COVID: Lessons Learned during the Pandemic, pp.67-77, American Chemical Society (2023).
- Mondal, S., & Cui, Q. Coacervation of poly-electrolytes in the presence of lipid bilayers: Mutual alteration of structure and morphology. Chem. Sci. 13, 7933 - 7946, (2022).
- Mondal, S., & Bagchi, B. From structure and dynamics to biomolecular functions: The ubiquitous role of solvent in biology. Curr. Opin. Struct. Biol. 77, 102462 (2022).
- Mukherjee, S.; Mondal, S., Acharya, S., & Bagchi, B. Tug-of-war between internal and external frictions and viscosity dependence of rate in biological reactions. Phys. Rev. Lett. 128(10), 108101, (2022).
- Mondal, S.; Mukherjee, S., Acharya, S., & Bagchi, B. Unfolding of Dynamical Events in the Early Stage of Insulin Dimer Dissociation. J. Phys. Chem. B, 125(29), 7958-7966, (2021).
- Mondal, S.; Bagchi, B. Anomalous Dielectric Response of Nano-confined water, J. Chem. Phys. 154, 044501 (2021). [Special issue on Fluids in Nanopores]
- Mondal, S.; Bagchi, B. Comment on "Investigation of dielectric constants of water in a nano-confined pore" by H. Zhu, F. Yang, Y. Zhu, A. Li, W. He, J. Huang and G. Li, RSC Adv., 2020, 10, 8628, RSC Advances 11 (9), 5179-5181 (2021).
- Acharya, S.; Mondal, S.; Mukherjee, S.; & Bagchi, B. Rate of Insulin Dimer Dissociation: Interplay between Memory Effects and Higher Dimensionality. J. Phys. Chem. B, 125(34), 9678-9691, (2021).
- Mukherjee, S.; Acharya, S.; Mondal, S.; Banerjee, P.; & Bagchi, B. Structural Stability of Insulin Oligomers and Protein Association–Dissociation Processes: Free Energy Landscape and Universal Role of Water. J. Phys. Chem. B, 125(43), 11793-11811, (2021). [Feature article]
- Mukherjee, S.; Mondal, S.; & Bagchi, B. Stochastic formulation of multiwave pandemic: decomposition of growth into inherent susceptibility and external infectivity distributions. J. Chem. Sci., 133(4), 1-18, (2021).
- Mondal, S.; Mondal, S.; Seki, K.; & Bagchi, B. An exact solution in the theory of fluorescence resonance energy transfer with vibrational relaxation. J. Chem. Phys., 154(13), 134104, (2021).
- Mondal, S.‡; Iyer, S. S.‡, & Bagchi, B. Emergence of Dynamical Coherence in a Driven One-dimensional Interacting Rotor Model. arXiv preprint arXiv:2107.04215, (2021). [‡equal contribution]
- Mondal, S.; Bagchi, B. Water Layer at Hydrophobic Surface: Electrically Dead but Dynamically Alive? Nano. Lett. 20 (12) 8959–8964 (2020).
- Mondal, S.; Bagchi, B. How different are the dynamics of nanoconfined water?, J. Chem. Phys. 152 (22), 224707 (2020).
- Mondal, S.; Mukherjee, S.; Bagchi, B. Mathematical modeling and cellular automata simulation of infectious disease dynamics: Applications to the understanding of herd immunity, J. Chem. Phys. 153 (11), 114119 (2020).
- Mondal, S.; Bagchi, B. Water in Carbon Nanotubes: Pronounced Anisotropy in Dielectric Dispersion and Its Microscopic Origin, J. Phys. Chem. Lett. 10 (20), 6287 (2019).
- Mondal, S.; Acharya, S.; Bagchi, B. Altered polar character of nanoconfined liquid water, Phys. Rev. Research 1 (3), 033145 (2019).
- Banerjee, P.; Mondal, S.; Bagchi, B. Effect of ethanol on insulin dimer dissociation, J. Chem. Phys. 150 (8), 084902 (2019).
- Mukherjee, S.; Mondal, S.; Bagchi, B. Mechanism of solvent control of protein dynamics Phys. Rev. Lett. 122 (5), 058101 (2019).
- Mukherjee, S.; Mondal, S.‡; Deshmukh, A. A.‡; Gopal, B.; Bagchi, B. Destabilization of Insulin Hexamer in Water–Ethanol Binary Mixture, J. Phys. Chem. B 123 (49), 10365-10375 (2019). [‡equal contribution]
- Mondal, S.; Acharya, S.; Biswas, R.; Bagchi, B.; Zare, R. N. Enhancement of reaction rate in small-sized droplets: A combined analytical and simulation study, J. Chem. Phys. 148 (24), 244704 (2018).
- Mondal, S.; Samajdar, R. N.; Mukherjee, S.; Bhattacharyya, A. J.; Bagchi, B. Unique features of metformin: A combined experimental, theoretical, and simulation study of its structure, dynamics, and interaction energetics with DNA grooves, J. Phys. Chem. B 122 (8), 2227-2242 (2018).
- Mukherjee, S.; Mondal, S.; Deshmukh, A. A.; Gopal, B.; Bagchi, B. What Gives an Insulin Hexamer Its Unique Shape and Stability? Role of Ten Confined Water Molecules, J. Phys. Chem. B 122 (5), 1631-1637 (2018). [c&en coverage]
- Mondal, S.‡; Mukherjee, S.‡; Acharya, S.; Bagchi, B. DNA Solvation Dynamics, J. Phys. Chem. B 122 (49), 11743-11761 (2018). [‡equal contribution]
- Banerjee, P.; Mondal, S.; Bagchi, B. Insulin dimer dissociation in aqueous solution: A computational study of free energy landscape and evolving microscopic structure along the reaction pathway, J. Chem, Phys. 149 (11), 114902 (2018).
- Mondal, S.; Mukherjee, S.; Bagchi, B. Protein hydration dynamics: Much ado about nothing?, J. Phys. Chem. Lett. 8 (19), 4878-4882 (2017).
- Mondal, S.; Mukherjee, S.; Bagchi, B. Origin of diverse time scales in the protein hydration layer solvation dynamics: A Simulation Study, J. Chem. Phys. 147, 154901 (2017).
- Mondal, S.; Mukherjee, S.; Bagchi, B. Decomposition of total solvation energy into core. side-chains and water contributions: Role of cross correlations and protein conformational fluctuations in dynamics of hydration layer, Chem. Phys. Lett. 683, 29-37 (2017).
- Mondal, S.‡; Mukherjee, S.‡; Bagchi, B. Distinguishing dynamical features of protein hydration layer: Distributions reveal what is hidden behind the average, J. Chem. Phys. 147 (2), 024901-1 (2017). [‡equal contribution]